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Hello Weidan,
in your cclm_735_stdout.txt file I see, that you get CFL violations during the run. The output for lffd1995010106p.nc is the first after these violations where you interpolate on pressure levels.
You should check, whether these CFL -violations ruin your simulation. Often, the interpolation to pressure levels is the first part, where the model notices that.
Ciao
Uli