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<p>
Dear all,
</p>
<p>
We are trying to install the last version of
<span class="caps">
COSMO
</span>
-
<span class="caps">
CLM
</span>
on an intel x86_64
<span class="caps">
GNU
</span>
/Linux machine. We edited Fopts as we can understand from the user guide. When cclm,cfu and int2lm were compiled, the exe files were created. In addition to this, we adapted the subchain script by changing all “llsubmit” commands with “batch” and then tried to make a test run. However, it gives the following error. By the way, we tried to install the model on another machine before with the help of well-qualified engineers but it also gave the same error.
</p>
<p>
<pre>
*************************
<ul>
<li>submitting INT2LM job *</li>
</ul>
*************************<br/>
YDATE_INI 2000010100<br/>
——- start INT2CLM
<span class="caps">SETUP</span> OF INT2LM
INITIALIZATIONS
Info about <span class="caps">KIND</span>-parameters: iintegers / <span class="caps">MPI</span>_INT = 4
1275069467
int_ga / <span class="caps">MPI</span>_INT = 4
1275069467
<span class="caps">INPUT</span> OF <span class="caps">THE</span> NAMELISTS
*** <span class="caps">NOTE</span>: Old 10 digit date format is used for output files of INT2LM
*** specifications of input soil main levels ***
*** from Namelist <span class="caps">INPUT</span> are used ***
*** specifications of LM soil main levels ***
*** from Namelist <span class="caps">INPUT</span> are used ***
*** A default set for vcoord parameters is used: 1
*** A default set for refatm parameters is used: 2
<span class="caps">ERROR</span> *** INT2LM not compiled for use of <span class="caps">NETCDF</span> ***
<span class="caps">ERROR</span> *** INT2LM not compiled for use of <span class="caps">NETCDF</span> ***
<span class="caps">ERROR</span> *** INT2LM not compiled for use of <span class="caps">NETCDF</span> ***
<span class="caps">ERROR</span> *** INT2LM not compiled for use of <span class="caps">NETCDF</span> ***</pre>
</p>
Code information used to build this binary
Binary name ….: tstint2lm
Library name ……: int2lm
Tag name ……….: V2_0
Checkin-Date ……: 2013-11-01 14:28:13
Code is modified ..: .false.
Compile-Date ……:
Compiled by …….: uschaett
Current start time : 2015-06-23 17:09
Running on nodes ..:
Data decomposition :
End of code information
<strong>
——————————————————————————————
</strong>
*
<span class="caps">
PROGRAM
</span>
<span class="caps">
TERMINATED
</span>
<span class="caps">
BECAUSE
</span>
OF
<span class="caps">
ERRORS
</span>
DETECTED
* IN
<span class="caps">
ROUTINE
</span>
: int2lm_org
*
*
<span class="caps">
ERROR
</span>
<span class="caps">
CODE
</span>
is 1002
*
<span class="caps">
ERROR
</span>
*** Wrong values occured in
<span class="caps">
NAMELIST
</span>
input ***
<strong>
——————————————————————————————
</strong>
application called
<span class="caps">
MPI
</span>
_Abort(
<span class="caps">
MPI
</span>
_COMM_WORLD, 1002) – process 0
<p>
===============================================================================
<br/>
=
<span class="caps">
BAD
</span>
<span class="caps">
TERMINATION
</span>
OF
<span class="caps">
ONE
</span>
OF
<span class="caps">
YOUR
</span>
<span class="caps">
APPLICATION
</span>
PROCESSES
<br/>
=
<span class="caps">
EXIT
</span>
<span class="caps">
CODE
</span>
: 234
<br/>
=
<span class="caps">
CLEANING
</span>
UP
<span class="caps">
REMAINING
</span>
PROCESSES
<br/>
=
<span class="caps">
YOU
</span>
<span class="caps">
CAN
</span>
<span class="caps">
IGNORE
</span>
<span class="caps">
THE
</span>
<span class="caps">
BELOW
</span>
<span class="caps">
CLEANUP
</span>
MESSAGES
<br/>
===============================================================================
</p>
<p>
</p>
<p>
I would be glad if you can help me with this problem.
</p>
<p>
Dear all,
</p>
<p>
We are trying to install the last version of
<span class="caps">
COSMO
</span>
-
<span class="caps">
CLM
</span>
on an intel x86_64
<span class="caps">
GNU
</span>
/Linux machine. We edited Fopts as we can understand from the user guide. When cclm,cfu and int2lm were compiled, the exe files were created. In addition to this, we adapted the subchain script by changing all “llsubmit” commands with “batch” and then tried to make a test run. However, it gives the following error. By the way, we tried to install the model on another machine before with the help of well-qualified engineers but it also gave the same error.
</p>
<p>
<pre>
*************************
<ul>
<li>submitting INT2LM job *</li>
</ul>
*************************<br/>
YDATE_INI 2000010100<br/>
——- start INT2CLM
<span class="caps">SETUP</span> OF INT2LM
INITIALIZATIONS
Info about <span class="caps">KIND</span>-parameters: iintegers / <span class="caps">MPI</span>_INT = 4
1275069467
int_ga / <span class="caps">MPI</span>_INT = 4
1275069467
<span class="caps">INPUT</span> OF <span class="caps">THE</span> NAMELISTS
*** <span class="caps">NOTE</span>: Old 10 digit date format is used for output files of INT2LM
*** specifications of input soil main levels ***
*** from Namelist <span class="caps">INPUT</span> are used ***
*** specifications of LM soil main levels ***
*** from Namelist <span class="caps">INPUT</span> are used ***
*** A default set for vcoord parameters is used: 1
*** A default set for refatm parameters is used: 2
<span class="caps">ERROR</span> *** INT2LM not compiled for use of <span class="caps">NETCDF</span> ***
<span class="caps">ERROR</span> *** INT2LM not compiled for use of <span class="caps">NETCDF</span> ***
<span class="caps">ERROR</span> *** INT2LM not compiled for use of <span class="caps">NETCDF</span> ***
<span class="caps">ERROR</span> *** INT2LM not compiled for use of <span class="caps">NETCDF</span> ***</pre>
</p>
Code information used to build this binary
Binary name ….: tstint2lm
Library name ……: int2lm
Tag name ……….: V2_0
Checkin-Date ……: 2013-11-01 14:28:13
Code is modified ..: .false.
Compile-Date ……:
Compiled by …….: uschaett
Current start time : 2015-06-23 17:09
Running on nodes ..:
Data decomposition :
End of code information
<strong>
——————————————————————————————
</strong>
*
<span class="caps">
PROGRAM
</span>
<span class="caps">
TERMINATED
</span>
<span class="caps">
BECAUSE
</span>
OF
<span class="caps">
ERRORS
</span>
DETECTED
* IN
<span class="caps">
ROUTINE
</span>
: int2lm_org
*
*
<span class="caps">
ERROR
</span>
<span class="caps">
CODE
</span>
is 1002
*
<span class="caps">
ERROR
</span>
*** Wrong values occured in
<span class="caps">
NAMELIST
</span>
input ***
<strong>
——————————————————————————————
</strong>
application called
<span class="caps">
MPI
</span>
_Abort(
<span class="caps">
MPI
</span>
_COMM_WORLD, 1002) – process 0
<p>
===============================================================================
<br/>
=
<span class="caps">
BAD
</span>
<span class="caps">
TERMINATION
</span>
OF
<span class="caps">
ONE
</span>
OF
<span class="caps">
YOUR
</span>
<span class="caps">
APPLICATION
</span>
PROCESSES
<br/>
=
<span class="caps">
EXIT
</span>
<span class="caps">
CODE
</span>
: 234
<br/>
=
<span class="caps">
CLEANING
</span>
UP
<span class="caps">
REMAINING
</span>
PROCESSES
<br/>
=
<span class="caps">
YOU
</span>
<span class="caps">
CAN
</span>
<span class="caps">
IGNORE
</span>
<span class="caps">
THE
</span>
<span class="caps">
BELOW
</span>
<span class="caps">
CLEANUP
</span>
MESSAGES
<br/>
===============================================================================
</p>
<p>
</p>
<p>
I would be glad if you can help me with this problem.
</p>
We are trying to install the last version of
COSMO
-
CLM
on an intel x86_64
GNU
/Linux machine. We edited Fopts as we can understand from the user guide. When cclm,cfu and int2lm were compiled, the exe files were created. In addition to this, we adapted the subchain script by changing all “llsubmit” commands with “batch” and then tried to make a test run. However, it gives the following error. By the way, we tried to install the model on another machine before with the help of well-qualified engineers but it also gave the same error.
*************************
submitting INT2LM job *
*************************
YDATE_INI 2000010100
——- start INT2CLM
SETUP OF INT2LM
INITIALIZATIONS
Info about KIND-parameters: iintegers / MPI_INT = 4
1275069467
int_ga / MPI_INT = 4
1275069467
INPUT OF THE NAMELISTS
*** NOTE: Old 10 digit date format is used for output files of INT2LM
*** specifications of input soil main levels ***
*** from Namelist INPUT are used ***
*** specifications of LM soil main levels ***
*** from Namelist INPUT are used ***
*** A default set for vcoord parameters is used: 1
*** A default set for refatm parameters is used: 2
ERROR *** INT2LM not compiled for use of NETCDF ***
ERROR *** INT2LM not compiled for use of NETCDF ***
ERROR *** INT2LM not compiled for use of NETCDF ***
ERROR *** INT2LM not compiled for use of NETCDF ***
Code information used to build this binary
Binary name ….: tstint2lm
Library name ……: int2lm
Tag name ……….: V2_0
Checkin-Date ……: 2013-11-01 14:28:13
Code is modified ..: .false.
Compile-Date ……:
Compiled by …….: uschaett
Current start time : 2015-06-23 17:09
Running on nodes ..:
Data decomposition :
End of code information
——————————————————————————————
*
PROGRAM
TERMINATED
BECAUSE
OF
ERRORS
DETECTED
* IN
ROUTINE
: int2lm_org
*
*
ERROR
CODE
is 1002
*
ERROR
*** Wrong values occured in
NAMELIST
input ***
——————————————————————————————
application called
MPI
_Abort(
MPI
_COMM_WORLD, 1002) – process 0
===============================================================================
=
BAD
TERMINATION
OF
ONE
OF
YOUR
APPLICATION
PROCESSES
=
EXIT
CODE
: 234
=
CLEANING
UP
REMAINING
PROCESSES
=
YOU
CAN
IGNORE
THE
BELOW
CLEANUP
MESSAGES
===============================================================================
I would be glad if you can help me with this problem.
<p>
Dear Cemre,
</p>
<p>
When I look at the extract of the INT2LM log file it tells me that you used a binary named “testint2lm”.
<br/>
But your Fopts tells me that you created a binary named “int2lm.exe” in directory bin.
<br/>
Of course, this does not fit together.
<br/>
If “testint2lm” exists somewhere in your directory I assume that it has been compiled without the “-
<span class="caps">
DNETCDF
</span>
” option.
<br/>
This would explain the “
<span class="caps">
ERROR
</span>
INT2LM not compiled for use of
<span class="caps">
NETCDF
</span>
*”
</p>
<p>
I don’t know whether the Namelist error is a follow-up error. I assume, it is.
<br/>
However,
<br/>
check your INT2LM Namelist settings by reading the “misc.global” file in Directory “
<span class="caps">
DOCS
</span>
” of your INT2LM Version 2.0 distribution
<br/>
in order to find out whether there are some changes in the Namelist.
</p>
<p>
Hans-Juergen
</p>
<p>
Dear Cemre,
</p>
<p>
When I look at the extract of the INT2LM log file it tells me that you used a binary named “testint2lm”.
<br/>
But your Fopts tells me that you created a binary named “int2lm.exe” in directory bin.
<br/>
Of course, this does not fit together.
<br/>
If “testint2lm” exists somewhere in your directory I assume that it has been compiled without the “-
<span class="caps">
DNETCDF
</span>
” option.
<br/>
This would explain the “
<span class="caps">
ERROR
</span>
INT2LM not compiled for use of
<span class="caps">
NETCDF
</span>
*”
</p>
<p>
I don’t know whether the Namelist error is a follow-up error. I assume, it is.
<br/>
However,
<br/>
check your INT2LM Namelist settings by reading the “misc.global” file in Directory “
<span class="caps">
DOCS
</span>
” of your INT2LM Version 2.0 distribution
<br/>
in order to find out whether there are some changes in the Namelist.
</p>
<p>
Hans-Juergen
</p>
When I look at the extract of the INT2LM log file it tells me that you used a binary named “testint2lm”.
But your Fopts tells me that you created a binary named “int2lm.exe” in directory bin.
Of course, this does not fit together.
If “testint2lm” exists somewhere in your directory I assume that it has been compiled without the “-
DNETCDF
” option.
This would explain the “
ERROR
INT2LM not compiled for use of
NETCDF
*”
I don’t know whether the Namelist error is a follow-up error. I assume, it is.
However,
check your INT2LM Namelist settings by reading the “misc.global” file in Directory “
DOCS
” of your INT2LM Version 2.0 distribution
in order to find out whether there are some changes in the Namelist.
<p>
The line in the output
<br/>
<pre>
Binary name ....: tstint2lm
</pre>
is misleading. Presently the name
<code>
tstint2lm
</code>
is hard coded in the source code.
<br/>
However, the message
<br/>
<pre>
ERROR *** INT2LM not compiled for use of NETCDF ***
</pre>
means that your “-
<span class="caps">
DNETCDF
</span>
” option does not work during the compilation. There is probably an error in your “Fopts”. Please ask your colleagues who use the same computer or your local system administrators to check this.
</p>
<p>
The line in the output
<br/>
<pre>
Binary name ....: tstint2lm
</pre>
is misleading. Presently the name
<code>
tstint2lm
</code>
is hard coded in the source code.
<br/>
However, the message
<br/>
<pre>
ERROR *** INT2LM not compiled for use of NETCDF ***
</pre>
means that your “-
<span class="caps">
DNETCDF
</span>
” option does not work during the compilation. There is probably an error in your “Fopts”. Please ask your colleagues who use the same computer or your local system administrators to check this.
</p>
is misleading. Presently the name
tstint2lm
is hard coded in the source code.
However, the message
ERROR *** INT2LM not compiled for use of NETCDF ***
means that your “-
DNETCDF
” option does not work during the compilation. There is probably an error in your “Fopts”. Please ask your colleagues who use the same computer or your local system administrators to check this.
<p>
Dear all,
</p>
<p>
We got “
<span class="caps">
ERROR
</span>
*** Wrong values occured in
<span class="caps">
NAMELIST
</span>
input ***” without
<span class="caps">
NETCDF
</span>
error.
</p>
<p>
How can we debug namelist(which namelist has a wrong values)?
</p>
<p>
Thanks for your time.
</p>
<p>
<pre>
*************************
* submitting INT2LM job *
*************************
<span class="caps">YDATE</span>_INI 2000010100
——- start INT2CLM
<span class="caps">SETUP</span> OF INT2LM
INITIALIZATIONS
Info about <span class="caps">KIND</span>-parameters: iintegers / <span class="caps">MPI</span>_INT = 4 7
int_ga / <span class="caps">MPI</span>_INT = 4 7
<span class="caps">INPUT</span> OF <span class="caps">THE</span> NAMELISTS
*** <span class="caps">NOTE</span>: Old 10 digit date format is used for output files of INT2LM
*** specifications of input soil main levels ***
*** from Namelist <span class="caps">INPUT</span> are used ***
*** specifications of LM soil main levels ***
*** from Namelist <span class="caps">INPUT</span> are used ***
*** A default set for vcoord parameters is used: 1
*** A default set for refatm parameters is used: 2</pre>
</p>
Code information used to build this binary
Binary name ….: tstint2lm
Library name ……: int2lm
Tag name ……….: V2_0
Checkin-Date ……: 2013-11-01 14:28:13
Code is modified ..: .false.
Compile-Date ……:
Compiled by …….: uschaett
Current start time : 2015-08-28 22:26
Running on nodes ..:
Data decomposition :
End of code information
<strong>
——————————————————————————————
</strong>
*
<span class="caps">
PROGRAM
</span>
<span class="caps">
TERMINATED
</span>
<span class="caps">
BECAUSE
</span>
OF
<span class="caps">
ERRORS
</span>
DETECTED
* IN
<span class="caps">
ROUTINE
</span>
: int2lm_org
*
*
<span class="caps">
ERROR
</span>
<span class="caps">
CODE
</span>
is 1002
*
<span class="caps">
ERROR
</span>
*** Wrong values occured in
<span class="caps">
NAMELIST
</span>
input ***
<strong>
——————————————————————————————
</strong>
—————————————————————————————————————
<span class="caps">
MPI
</span>
_ABORT was invoked on rank 0 in communicator
<span class="caps">
MPI
</span>
_COMM_WORLD with errorcode 1002.
<span class="caps">
NOTE
</span>
: invoking
<span class="caps">
MPI
</span>
_ABORT causes Open
<span class="caps">
MPI
</span>
to kill all
<span class="caps">
MPI
</span>
processes.
You may or may not see output from other processes, depending on exactly when Open
<span class="caps">
MPI
</span>
kills them.
—————————————————————————————————————
<p>
</p>
<p>
Dear all,
</p>
<p>
We got “
<span class="caps">
ERROR
</span>
*** Wrong values occured in
<span class="caps">
NAMELIST
</span>
input ***” without
<span class="caps">
NETCDF
</span>
error.
</p>
<p>
How can we debug namelist(which namelist has a wrong values)?
</p>
<p>
Thanks for your time.
</p>
<p>
<pre>
*************************
* submitting INT2LM job *
*************************
<span class="caps">YDATE</span>_INI 2000010100
——- start INT2CLM
<span class="caps">SETUP</span> OF INT2LM
INITIALIZATIONS
Info about <span class="caps">KIND</span>-parameters: iintegers / <span class="caps">MPI</span>_INT = 4 7
int_ga / <span class="caps">MPI</span>_INT = 4 7
<span class="caps">INPUT</span> OF <span class="caps">THE</span> NAMELISTS
*** <span class="caps">NOTE</span>: Old 10 digit date format is used for output files of INT2LM
*** specifications of input soil main levels ***
*** from Namelist <span class="caps">INPUT</span> are used ***
*** specifications of LM soil main levels ***
*** from Namelist <span class="caps">INPUT</span> are used ***
*** A default set for vcoord parameters is used: 1
*** A default set for refatm parameters is used: 2</pre>
</p>
Code information used to build this binary
Binary name ….: tstint2lm
Library name ……: int2lm
Tag name ……….: V2_0
Checkin-Date ……: 2013-11-01 14:28:13
Code is modified ..: .false.
Compile-Date ……:
Compiled by …….: uschaett
Current start time : 2015-08-28 22:26
Running on nodes ..:
Data decomposition :
End of code information
<strong>
——————————————————————————————
</strong>
*
<span class="caps">
PROGRAM
</span>
<span class="caps">
TERMINATED
</span>
<span class="caps">
BECAUSE
</span>
OF
<span class="caps">
ERRORS
</span>
DETECTED
* IN
<span class="caps">
ROUTINE
</span>
: int2lm_org
*
*
<span class="caps">
ERROR
</span>
<span class="caps">
CODE
</span>
is 1002
*
<span class="caps">
ERROR
</span>
*** Wrong values occured in
<span class="caps">
NAMELIST
</span>
input ***
<strong>
——————————————————————————————
</strong>
—————————————————————————————————————
<span class="caps">
MPI
</span>
_ABORT was invoked on rank 0 in communicator
<span class="caps">
MPI
</span>
_COMM_WORLD with errorcode 1002.
<span class="caps">
NOTE
</span>
: invoking
<span class="caps">
MPI
</span>
_ABORT causes Open
<span class="caps">
MPI
</span>
to kill all
<span class="caps">
MPI
</span>
processes.
You may or may not see output from other processes, depending on exactly when Open
<span class="caps">
MPI
</span>
kills them.
—————————————————————————————————————
<p>
</p>
We got “
ERROR
*** Wrong values occured in
NAMELIST
input ***” without
NETCDF
error.
How can we debug namelist(which namelist has a wrong values)?
Thanks for your time.
*************************
* submitting INT2LM job *
*************************
YDATE_INI 2000010100
——- start INT2CLM
SETUP OF INT2LM
INITIALIZATIONS
Info about KIND-parameters: iintegers / MPI_INT = 4 7
int_ga / MPI_INT = 4 7
INPUT OF THE NAMELISTS
*** NOTE: Old 10 digit date format is used for output files of INT2LM
*** specifications of input soil main levels ***
*** from Namelist INPUT are used ***
*** specifications of LM soil main levels ***
*** from Namelist INPUT are used ***
*** A default set for vcoord parameters is used: 1
*** A default set for refatm parameters is used: 2
Code information used to build this binary
Binary name ….: tstint2lm
Library name ……: int2lm
Tag name ……….: V2_0
Checkin-Date ……: 2013-11-01 14:28:13
Code is modified ..: .false.
Compile-Date ……:
Compiled by …….: uschaett
Current start time : 2015-08-28 22:26
Running on nodes ..:
Data decomposition :
End of code information
——————————————————————————————
*
PROGRAM
TERMINATED
BECAUSE
OF
ERRORS
DETECTED
* IN
ROUTINE
: int2lm_org
*
*
ERROR
CODE
is 1002
*
ERROR
*** Wrong values occured in
NAMELIST
input ***
——————————————————————————————
—————————————————————————————————————
MPI
_ABORT was invoked on rank 0 in communicator
MPI
_COMM_WORLD with errorcode 1002.
NOTE
: invoking
MPI
_ABORT causes Open
MPI
to kill all
MPI
processes.
You may or may not see output from other processes, depending on exactly when Open
MPI
kills them.
—————————————————————————————————————
<p>
Dear Cemre,
</p>
<p>
no, there is no debug possibility for namelists.
<br/>
You have to
</p>
<p>
- check your namelist for typing errors
<br/>
- and/or compare your namelist with the User Guide that corresponds to the INT2LM version your are using in order to find out whether your namelist settings are still consistent with the INT2LM version; reading the misc.global in the
<span class="caps">
DOCS
</span>
directory might also help
<br/>
- and/or look into the source code
<br/>
- provide some more information, for example the version no. of our INT2LM and your namelist settings (e.g. the
<span class="caps">
ASCII
</span>
file “
<span class="caps">
INPUT
</span>
” from which INT2LM reads the namelists).
</p>
<p>
Hans-Juergen
</p>
<p>
Dear Cemre,
</p>
<p>
no, there is no debug possibility for namelists.
<br/>
You have to
</p>
<p>
- check your namelist for typing errors
<br/>
- and/or compare your namelist with the User Guide that corresponds to the INT2LM version your are using in order to find out whether your namelist settings are still consistent with the INT2LM version; reading the misc.global in the
<span class="caps">
DOCS
</span>
directory might also help
<br/>
- and/or look into the source code
<br/>
- provide some more information, for example the version no. of our INT2LM and your namelist settings (e.g. the
<span class="caps">
ASCII
</span>
file “
<span class="caps">
INPUT
</span>
” from which INT2LM reads the namelists).
</p>
<p>
Hans-Juergen
</p>
no, there is no debug possibility for namelists.
You have to
- check your namelist for typing errors
- and/or compare your namelist with the User Guide that corresponds to the INT2LM version your are using in order to find out whether your namelist settings are still consistent with the INT2LM version; reading the misc.global in the
DOCS
directory might also help
- and/or look into the source code
- provide some more information, for example the version no. of our INT2LM and your namelist settings (e.g. the
ASCII
file “
INPUT
” from which INT2LM reads the namelists).
<p>
Dear colleagues, I have faced the similar problem during the int2lm run. In attached slurm-84285.out it writes:
</p>
<span class="caps">
ERROR
</span>
*** yinext_form_read
netCDF format not implemented for the chosen input model
<span class="caps">
ERROR
</span>
*** yin_form_read
netCDF format not implemented for the chosen input model
<p>
and then crashes with errorcode 1002. I’m attaching the
<span class="caps">
INPUT
</span>
file also.
<br/>
By the way, the netcdf commands are working correctly, other tasks with the same (!) file are going OK. Could you suggest something about these confusion? Or it could be associated with the local supercomputer properties and options?
<br/>
Thank you very much!
</p>
<p>
Dear colleagues, I have faced the similar problem during the int2lm run. In attached slurm-84285.out it writes:
</p>
<span class="caps">
ERROR
</span>
*** yinext_form_read
netCDF format not implemented for the chosen input model
<span class="caps">
ERROR
</span>
*** yin_form_read
netCDF format not implemented for the chosen input model
<p>
and then crashes with errorcode 1002. I’m attaching the
<span class="caps">
INPUT
</span>
file also.
<br/>
By the way, the netcdf commands are working correctly, other tasks with the same (!) file are going OK. Could you suggest something about these confusion? Or it could be associated with the local supercomputer properties and options?
<br/>
Thank you very much!
</p>
Dear colleagues, I have faced the similar problem during the int2lm run. In attached slurm-84285.out it writes:
ERROR
*** yinext_form_read
netCDF format not implemented for the chosen input model
ERROR
*** yin_form_read
netCDF format not implemented for the chosen input model
and then crashes with errorcode 1002. I’m attaching the
INPUT
file also.
By the way, the netcdf commands are working correctly, other tasks with the same (!) file are going OK. Could you suggest something about these confusion? Or it could be associated with the local supercomputer properties and options?
Thank you very much!
<p>
Please always check first whether you namelist parameters are valid for the INT2LM version you use:
<br/>
e.g.
<code>
lprog_qni=.TRUE., lprog_qn_crsg=.TRUE.,
</code>
<br/>
are no valid namelist parameters in int2lm2.0_clm4. They are in introduced in version int2lm2.1 which is not a supported
<span class="caps">
CLM
</span>
-Community version.
</p>
<p>
Please always check first whether you namelist parameters are valid for the INT2LM version you use:
<br/>
e.g.
<code>
lprog_qni=.TRUE., lprog_qn_crsg=.TRUE.,
</code>
<br/>
are no valid namelist parameters in int2lm2.0_clm4. They are in introduced in version int2lm2.1 which is not a supported
<span class="caps">
CLM
</span>
-Community version.
</p>
Please always check first whether you namelist parameters are valid for the INT2LM version you use:
e.g.
lprog_qni=.TRUE., lprog_qn_crsg=.TRUE.,
are no valid namelist parameters in int2lm2.0_clm4. They are in introduced in version int2lm2.1 which is not a supported
CLM
-Community version.
<p>
Dear all,
<br/>
I have also faced a very similar Problem while running INT2LM. I get the following Errors:
</p>
<pre>
0: INPUT OF THE NAMELISTS
0: Namelist-ERROR CONTRL: invalid reference to variable in NAMELIST input, unit 21, file /mnt/lustre02/work/bb0937/Ref_run/joboutputs/int2lm/1999_11/INPUT, line 6, position 15
0: ERROR *** while reading NAMELIST Group /CONTRL/ ***
0: *** A default set for vcoord parameters is used: 2
0: *** A default set for refatm parameters is used: 2
0: ERROR *** yinext_form_read
0: netCDF format not implemented for the chosen input model
0: ERROR *** yin_form_read
0: netCDF format not implemented for the chosen input model
</pre>
<p>
and it also crashes with Error Code 1002. We cannot find a solution for this problem, so I would be very grateful for your help.
<br/>
Thank you very much!
<br/>
Eva
</p>
<p>
Dear all,
<br/>
I have also faced a very similar Problem while running INT2LM. I get the following Errors:
</p>
<pre>
0: INPUT OF THE NAMELISTS
0: Namelist-ERROR CONTRL: invalid reference to variable in NAMELIST input, unit 21, file /mnt/lustre02/work/bb0937/Ref_run/joboutputs/int2lm/1999_11/INPUT, line 6, position 15
0: ERROR *** while reading NAMELIST Group /CONTRL/ ***
0: *** A default set for vcoord parameters is used: 2
0: *** A default set for refatm parameters is used: 2
0: ERROR *** yinext_form_read
0: netCDF format not implemented for the chosen input model
0: ERROR *** yin_form_read
0: netCDF format not implemented for the chosen input model
</pre>
<p>
and it also crashes with Error Code 1002. We cannot find a solution for this problem, so I would be very grateful for your help.
<br/>
Thank you very much!
<br/>
Eva
</p>
Dear all,
I have also faced a very similar Problem while running INT2LM. I get the following Errors:
0: INPUT OF THE NAMELISTS
0: Namelist-ERROR CONTRL: invalid reference to variable in NAMELIST input, unit 21, file /mnt/lustre02/work/bb0937/Ref_run/joboutputs/int2lm/1999_11/INPUT, line 6, position 15
0: ERROR *** while reading NAMELIST Group /CONTRL/ ***
0: *** A default set for vcoord parameters is used: 2
0: *** A default set for refatm parameters is used: 2
0: ERROR *** yinext_form_read
0: netCDF format not implemented for the chosen input model
0: ERROR *** yin_form_read
0: netCDF format not implemented for the chosen input model
and it also crashes with Error Code 1002. We cannot find a solution for this problem, so I would be very grateful for your help.
Thank you very much!
Eva
<p>
The namelist looks fine at a first glance. It seems as if the line
<code>
yinput_model='CM',
</code>
is not read properly.
<br/>
Can you copy the line
<code>
PRINT *, lgme2lm, lgsf2lm, lgsm2lm, lec2lm, lum2lm, lhir2lm
</code>
near the line 5136 so that it looks like below, compile, run the program again and post the error message?
</p>
<p>
<pre>
IF (.NOT. (llm2lm .OR. lcm2lm .OR. licon2lm)) THEN
IF (<acronym title="yinext_form_read"><span class="caps">TRIM</span></acronym> 'ncdf') THEN
PRINT *,' ERROR *** yinext_form_read '
PRINT *,' netCDF format not implemented for the chosen input model'
PRINT *, lgme2lm, lgsf2lm, lgsm2lm, lec2lm, lum2lm, lhir2lm
ierrstat = 1002
ENDIF
IF (TRIM(yin_form_read) ‘ncdf’) THEN
<span class="caps">PRINT</span> *,’ <span class="caps">ERROR</span> *** yin_form_read ‘
<span class="caps">PRINT</span> *,’ netCDF format not implemented for the chosen input model‘
ierrstat = 1002
ENDIF
<span class="caps">ENDIF</span></pre>
</p>
<p>
</p>
<p>
The namelist looks fine at a first glance. It seems as if the line
<code>
yinput_model='CM',
</code>
is not read properly.
<br/>
Can you copy the line
<code>
PRINT *, lgme2lm, lgsf2lm, lgsm2lm, lec2lm, lum2lm, lhir2lm
</code>
near the line 5136 so that it looks like below, compile, run the program again and post the error message?
</p>
<p>
<pre>
IF (.NOT. (llm2lm .OR. lcm2lm .OR. licon2lm)) THEN
IF (<acronym title="yinext_form_read"><span class="caps">TRIM</span></acronym> 'ncdf') THEN
PRINT *,' ERROR *** yinext_form_read '
PRINT *,' netCDF format not implemented for the chosen input model'
PRINT *, lgme2lm, lgsf2lm, lgsm2lm, lec2lm, lum2lm, lhir2lm
ierrstat = 1002
ENDIF
IF (TRIM(yin_form_read) ‘ncdf’) THEN
<span class="caps">PRINT</span> *,’ <span class="caps">ERROR</span> *** yin_form_read ‘
<span class="caps">PRINT</span> *,’ netCDF format not implemented for the chosen input model‘
ierrstat = 1002
ENDIF
<span class="caps">ENDIF</span></pre>
</p>
<p>
</p>
The namelist looks fine at a first glance. It seems as if the line
yinput_model='CM',
is not read properly.
Can you copy the line
PRINT *, lgme2lm, lgsf2lm, lgsm2lm, lec2lm, lum2lm, lhir2lm
near the line 5136 so that it looks like below, compile, run the program again and post the error message?
IF (.NOT. (llm2lm .OR. lcm2lm .OR. licon2lm)) THEN
IF (TRIM 'ncdf') THEN
PRINT *,' ERROR *** yinext_form_read '
PRINT *,' netCDF format not implemented for the chosen input model'
PRINT *, lgme2lm, lgsf2lm, lgsm2lm, lec2lm, lum2lm, lhir2lm
ierrstat = 1002
ENDIF
IF (TRIM(yin_form_read) ‘ncdf’) THEN
PRINT *,’ ERROR *** yin_form_read ‘
PRINT *,’ netCDF format not implemented for the chosen input model‘
ierrstat = 1002
ENDIF
ENDIF
<p>
Thank you very much for your quick help. The error message now Looks like:
<br/>
<pre>
0: INPUT OF THE NAMELISTS
0: Namelist-ERROR CONTRL: invalid reference to variable in NAMELIST input, unit 21, file /mnt/lustre02/work/bb0937/Ref_run/joboutputs/int2lm/1999_11/INPUT, line 6, position 15
0: ERROR *** while reading NAMELIST Group /CONTRL/ ***
0: *** A default set for vcoord parameters is used: 2
0: *** A default set for refatm parameters is used: 2
0: ERROR *** yinext_form_read
0: netCDF format not implemented for the chosen input model
0: F F F F F F
0: ERROR *** yin_form_read
0: netCDF format not implemented for the chosen input model
</pre>
</p>
<p>
Thank you very much for your quick help. The error message now Looks like:
<br/>
<pre>
0: INPUT OF THE NAMELISTS
0: Namelist-ERROR CONTRL: invalid reference to variable in NAMELIST input, unit 21, file /mnt/lustre02/work/bb0937/Ref_run/joboutputs/int2lm/1999_11/INPUT, line 6, position 15
0: ERROR *** while reading NAMELIST Group /CONTRL/ ***
0: *** A default set for vcoord parameters is used: 2
0: *** A default set for refatm parameters is used: 2
0: ERROR *** yinext_form_read
0: netCDF format not implemented for the chosen input model
0: F F F F F F
0: ERROR *** yin_form_read
0: netCDF format not implemented for the chosen input model
</pre>
</p>
Thank you very much for your quick help. The error message now Looks like:
0: INPUT OF THE NAMELISTS
0: Namelist-ERROR CONTRL: invalid reference to variable in NAMELIST input, unit 21, file /mnt/lustre02/work/bb0937/Ref_run/joboutputs/int2lm/1999_11/INPUT, line 6, position 15
0: ERROR *** while reading NAMELIST Group /CONTRL/ ***
0: *** A default set for vcoord parameters is used: 2
0: *** A default set for refatm parameters is used: 2
0: ERROR *** yinext_form_read
0: netCDF format not implemented for the chosen input model
0: F F F F F F
0: ERROR *** yin_form_read
0: netCDF format not implemented for the chosen input model
<p>
I just realised that I overlooked the line
<br/>
<pre>
Namelist-ERROR CONTRL: invalid reference to variable in NAMELIST input, unit 21, file /mnt/lustre02/work/bb0937/Ref_run/joboutputs/int2lm/1999_11/INPUT, line 6, position 15
</pre>
<br/>
Actually the parameter
<code>
lbalance_pp
</code>
(which is in your namelist at line 6) is no namelist parameter anymore and thus the reading of the namelist stopped at that point. Please remove the parameter, it is always set to .TRUE. in the program code itself.
</p>
<p>
I just realised that I overlooked the line
<br/>
<pre>
Namelist-ERROR CONTRL: invalid reference to variable in NAMELIST input, unit 21, file /mnt/lustre02/work/bb0937/Ref_run/joboutputs/int2lm/1999_11/INPUT, line 6, position 15
</pre>
<br/>
Actually the parameter
<code>
lbalance_pp
</code>
(which is in your namelist at line 6) is no namelist parameter anymore and thus the reading of the namelist stopped at that point. Please remove the parameter, it is always set to .TRUE. in the program code itself.
</p>
Namelist-ERROR CONTRL: invalid reference to variable in NAMELIST input, unit 21, file /mnt/lustre02/work/bb0937/Ref_run/joboutputs/int2lm/1999_11/INPUT, line 6, position 15
Actually the parameter
lbalance_pp
(which is in your namelist at line 6) is no namelist parameter anymore and thus the reading of the namelist stopped at that point. Please remove the parameter, it is always set to .TRUE. in the program code itself.
Error Code 1002
Dear all,
We are trying to install the last version of COSMO - CLM on an intel x86_64 GNU /Linux machine. We edited Fopts as we can understand from the user guide. When cclm,cfu and int2lm were compiled, the exe files were created. In addition to this, we adapted the subchain script by changing all “llsubmit” commands with “batch” and then tried to make a test run. However, it gives the following error. By the way, we tried to install the model on another machine before with the help of well-qualified engineers but it also gave the same error.
- submitting INT2LM job *
*************************YDATE_INI 2000010100
——- start INT2CLM SETUP OF INT2LM INITIALIZATIONS Info about KIND-parameters: iintegers / MPI_INT = 4 1275069467 int_ga / MPI_INT = 4 1275069467 INPUT OF THE NAMELISTS *** NOTE: Old 10 digit date format is used for output files of INT2LM *** specifications of input soil main levels *** *** from Namelist INPUT are used *** *** specifications of LM soil main levels *** *** from Namelist INPUT are used *** *** A default set for vcoord parameters is used: 1 *** A default set for refatm parameters is used: 2 ERROR *** INT2LM not compiled for use of NETCDF *** ERROR *** INT2LM not compiled for use of NETCDF *** ERROR *** INT2LM not compiled for use of NETCDF *** ERROR *** INT2LM not compiled for use of NETCDF *** Code information used to build this binary Binary name ….: tstint2lm Library name ……: int2lm Tag name ……….: V2_0 Checkin-Date ……: 2013-11-01 14:28:13 Code is modified ..: .false. Compile-Date ……: Compiled by …….: uschaett Current start time : 2015-06-23 17:09 Running on nodes ..: Data decomposition : End of code information —————————————————————————————— * PROGRAM TERMINATED BECAUSE OF ERRORS DETECTED * IN ROUTINE : int2lm_org * * ERROR CODE is 1002 * ERROR *** Wrong values occured in NAMELIST input *** —————————————————————————————— application called MPI _Abort( MPI _COMM_WORLD, 1002) – process 0
===============================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= EXIT CODE : 234
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===============================================================================
I would be glad if you can help me with this problem.
Dear Cemre,
When I look at the extract of the INT2LM log file it tells me that you used a binary named “testint2lm”.
But your Fopts tells me that you created a binary named “int2lm.exe” in directory bin.
Of course, this does not fit together.
If “testint2lm” exists somewhere in your directory I assume that it has been compiled without the “- DNETCDF ” option.
This would explain the “ ERROR INT2LM not compiled for use of NETCDF *”
I don’t know whether the Namelist error is a follow-up error. I assume, it is.
However,
check your INT2LM Namelist settings by reading the “misc.global” file in Directory “ DOCS ” of your INT2LM Version 2.0 distribution
in order to find out whether there are some changes in the Namelist.
Hans-Juergen
The line in the output
is misleading. Presently the nametstint2lm
is hard coded in the source code.However, the message
means that your “- DNETCDF ” option does not work during the compilation. There is probably an error in your “Fopts”. Please ask your colleagues who use the same computer or your local system administrators to check this.
Dear all,
We got “ ERROR *** Wrong values occured in NAMELIST input ***” without NETCDF error.
How can we debug namelist(which namelist has a wrong values)?
Thanks for your time.
Code information used to build this binary Binary name ….: tstint2lm Library name ……: int2lm Tag name ……….: V2_0 Checkin-Date ……: 2013-11-01 14:28:13 Code is modified ..: .false. Compile-Date ……: Compiled by …….: uschaett Current start time : 2015-08-28 22:26 Running on nodes ..: Data decomposition : End of code information —————————————————————————————— * PROGRAM TERMINATED BECAUSE OF ERRORS DETECTED * IN ROUTINE : int2lm_org * * ERROR CODE is 1002 * ERROR *** Wrong values occured in NAMELIST input *** —————————————————————————————— ————————————————————————————————————— MPI _ABORT was invoked on rank 0 in communicator MPI _COMM_WORLD with errorcode 1002. NOTE : invoking MPI _ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. —————————————————————————————————————Dear Cemre,
no, there is no debug possibility for namelists.
You have to
- check your namelist for typing errors
- and/or compare your namelist with the User Guide that corresponds to the INT2LM version your are using in order to find out whether your namelist settings are still consistent with the INT2LM version; reading the misc.global in the DOCS directory might also help
- and/or look into the source code
- provide some more information, for example the version no. of our INT2LM and your namelist settings (e.g. the ASCII file “ INPUT ” from which INT2LM reads the namelists).
Hans-Juergen
Dear colleagues, I have faced the similar problem during the int2lm run. In attached slurm-84285.out it writes:
ERROR *** yinext_form_read netCDF format not implemented for the chosen input model ERROR *** yin_form_read netCDF format not implemented for the chosen input modeland then crashes with errorcode 1002. I’m attaching the INPUT file also.
By the way, the netcdf commands are working correctly, other tasks with the same (!) file are going OK. Could you suggest something about these confusion? Or it could be associated with the local supercomputer properties and options?
Thank you very much!
Please always check first whether you namelist parameters are valid for the INT2LM version you use:
e.g.
lprog_qni=.TRUE., lprog_qn_crsg=.TRUE.,
are no valid namelist parameters in int2lm2.0_clm4. They are in introduced in version int2lm2.1 which is not a supported CLM -Community version.
Dear all,
I have also faced a very similar Problem while running INT2LM. I get the following Errors:
and it also crashes with Error Code 1002. We cannot find a solution for this problem, so I would be very grateful for your help.
Thank you very much!
Eva
The namelist looks fine at a first glance. It seems as if the line
yinput_model='CM',
is not read properly.Can you copy the line
PRINT *, lgme2lm, lgsf2lm, lgsm2lm, lec2lm, lum2lm, lhir2lm
near the line 5136 so that it looks like below, compile, run the program again and post the error message?Thank you very much for your quick help. The error message now Looks like:
I just realised that I overlooked the line
Actually the parameter
lbalance_pp
(which is in your namelist at line 6) is no namelist parameter anymore and thus the reading of the namelist stopped at that point. Please remove the parameter, it is always set to .TRUE. in the program code itself.